How to Set Up NDIS Bookkeeping
NDIS bookkeeping has specific quirks — GST treatment, payroll allocations, plan-manager reconciliation. Here's the setup.
The steps
- Choose accounting software (Xero is the de facto NDIS standard)
- Set up GST registration if turnover exceeds threshold (most NDIS providers don't register)
- Set up payroll for SCHADS-aligned workers
- Set up bank feed and connect to NDIS rostering software
- Set up monthly reconciliation routine
- Set up plan-manager and NDIA-portal payment matching
- Engage a bookkeeper with NDIS experience
Common mistakes to avoid
- Treating NDIS like normal commercial GST (most aren't registered)
- Manual payroll calculations for SCHADS Award rates
- No reconciliation between rostered shifts and paid invoices
Last updated: 2026-04-28